• Bioinfo.SoftwareEngr.I

    Job Locations USA-NY-New York
    Posted Date 7 days ago(1/14/2019 12:42 PM)
    Requisition ID
    Allied Health - Biomedical Engineering
  • Company Overview

    At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence and improving outcomes.
    For the 28th year, MSK has been named a top hospital for cancer by U.S. News & World Report. We are proud to be on Becker’s Healthcare list as one of the 150 Great Places to Work in Healthcare in 2018, as well as one of Glassdoor’s Employees’ Choice Best Place to Work for 2018. We’re treating cancer, one patient at a time. Join us and make a difference every day.

    Job Description

    The Clinical Bioinformatics group within the department of Pathology specializes in analyzing next-generation sequencing data to characterize the spectrum of genetic mutations in patient tumors. Analysis of this genomic data is guiding treatment decisions and the enrollment of patients onto clinical trials of novel targeted therapies. 


    The clinical data at our group has rapidly grown from 40TB to a private cloud of 2PB, and is managed by over a dozen production servers that facilitate automatic processing of terabytes of data per day, high-end intensive and slick cutting edge visualization portals, and increasingly challenging genomic databases. Clinical bioinformatics group is revolutionizing the health level exchange systems to integrate genomic and biomedical systems.


    We are looking for a talented and self-driven bioinformatics software engineer to help us to continue being the pioneer next generation sequencing based clinical software systems. As a Bioinformatics Software Engineer, you will work in a highly collaborative environment, engineering bleeding edge clinical and research software systems that directly impact the patient care, and will be responsible for building the next-generation informatics systems revolutionizing the cancer care and diagnosis. You will also participate in developing high throughput data processing, petabyte scale data management, microservices oriented RESTful APIs, genomic and analytic portals, department-wide messaging/queuing system, and socket based TCP/IP servers. Come join us in our aspiration to cure Cancer!


    Responsibilities include but are not limited to: 

    • Take part in the developing cutting edge software systems for clinical diagnostics and to support existing clinical bioinformatics software.
    • Work on full-stack components for various clinical bioinformatics software system.
    • Will implement and follow the best practices in software development, code versioning, software testing, and deployment.
    • Develop/Maintain clinical bioinformatics databases using MySQL, MongoDB, GraphDB, and hybrid technologies. Willing to learn and implement efficient database design methodologies.
    • Develops and maintains user interfaces for reporting of output from petabyte scale data pre-processing and eager to work with in-house developed and public cloud solutions.
    • Takes part in technical discussions including but not limited to code reviews, and build/release management.
    • Works with UNIX systems administrator to configure new and existing software packages for security, performance and maintainability.
    • Participates in building proper production, development, and integration environments and assists in unit/functional, regression, and system testing.
    • Develops and maintains software systems that interface with other departmental and/or institutional systems through RESTful APIs, Web interfaces, and socket based client/servers.
    • Participate in designing and developing department-wide messaging queue, enterprise search platforms, and other enterprise-level informatics systems.
    • Proficient in using a mix of bleeding edge software technologies/Tools: Python, Flask/Dgango, Java, React, Angular, D3, Node.js, JavaScript, Message Queues, Search engines, MySQL, MongoDB, PL/SQL, and AWS-like systems.


    You Are:

    • Capable of building strong customer relationships and delivering customer-centric products
    • A good decision-maker, with proven success at making timely decisions that keep the organization moving forward.
    • Able to work effectively in a fast paced changing environment solving for complex problems, consistently achieving results, even under tough situations.
    • Adept at planning and prioritizing work to meet commitments aligned with organizational goals
    • Adept at building partnerships and working collaboratively with others to meet shared objectives and goals.
    • An effective communicator, capable of determining how best to reach different audiences and executing communications based on that understanding.
    • Resilient in recovering from setbacks and skilled at finding detours around problems.
    • Adept at learning quickly, applying insights from past efforts to new situations.



    • Bachelor’s Degree with 0-2 years of computer and sequencing data experience. Master’s preferred. 
    • Experience with full stack web development especially with Python/Java/Ruby, Flask/Spring/Django, MySQL/MongoDB/GraphDB, React/Angular/Node.js/JavaScript is required.
    • Next generation sequencing and cancer genetics experience preferred but not required.
    • Experience with building front end data visualization portals, high volume data processing, messaging queues, and enterprise search engines is desirable


    This position requires cross-disciplinary and strong analytical skills as well as broad experience using computational methods, databases, software and hardware.




    MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.  


    Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.


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